卢坤
发布时间2013-12-30 11:05:08     作者:    浏览次数: 次

卢坤,男,汉族,四川绵竹人,中共党员,博士,研究员,博士生导师。现任西南大学农业科学研究院副院长、农学与生物科技学院教工一支部书记、南方山地农业教育部工程技术研究中心主任,南方山地作物逆境生物学国家级培育基地副主任,油菜分子育种研究所负责人。现为中国遗传学会和中国生物工程学会会员、重庆市科技青年联合会第六届理事会常务理事、重庆市生物化学与分子生物学副监事长、重庆市农学会理事、重庆市高等学校青年骨干教师,获中国作物学会油料作物分会首届青年创新奖。主要研究方向为油菜群体基因组和功能基因组,擅长多组学联合分析解析复杂性状的遗传调控网络。目前,主持国家自然科学基金项目3项、国家重点研发计划课题和子课题各1项,省部级项目7项,被聘为国家自然科学基金和中国博士后基金项目通讯评审专家,国际会议口头报告8次,担任国际学术会议大会秘书3次,以第一和通讯作者在Nature CommunicationsNucleic Acids Research等杂志发表论文30余篇,参编专著2部,获国家发明专利授权8项,任《中国油料作物学报》和《中国农学通报》编委及Plant CellPlant Biotechnology Journal20余种杂志的审稿专家。

Researchgatehttps://www.researchgate.net/profile/Kun_Lu3

ORCiD: https://orcid.org/0000-0003-1370-8633

Google Scholar: https://scholar.google.com/citations?hl=en&user=R964Ky4AAAAJ

 

学习经历

1998-2002:西南农业大学农学与生物科技学院,农学学士

2002-2008:西南大学农学与生物科技学院,农学博士(导师:李加纳教授)

工作经历

2009-2010:西南大学农学与生物科技学院,生物学博士后(导师:李加纳教授)

2012-2013Department of Horticulture and Landscape Architecture, Purdue University, Postdoctoral fellow (导师:Zhu Jian-Kang教授、美国科学院院士)

2010-2017:西南大学农学与生物科技学院,副研究员,硕士生导师

2017-至今:西南大学农学与生物科技学院,研究员,博士生导师

2018.12-至今:南方山地农业教育部工程技术研究中心主任

2019.02-至今:南方山地作物逆境生物学国家级培育基地副主任

2019.06-至今:西南大学农业科学研究院副院长

研究方向

1. 油菜高收获指数与高产的分子机制

2. 植物多倍体进化机制与群体遗传学

3. 油菜源-库能量分配的分子调控网络

研究生、博士后招生

1. 博士后:作物学、生物学

2. 博士研究生:作物遗传育种、生物化学与分子生物学

3. 硕士研究生:作物遗传育种、分子遗传学、生物信息学

联系方式

E-maildrlukun at swu.edu.cn; swuklu at gmial.com

通信地址:重庆市北碚区天生路216号西南大学农业科学研究院;邮编:400716

近年主持的主要科研项目

1. 国家自然科学基金面上项目:甘蓝型油菜SPL基因介导ROSSA途径提高菌核病抗性的分子机制,60万,2019-2022 (31871653)

2. 国家重点研发计划课题:长江上游及北方油菜高产优质适宜机械化新品种培育——油菜优异育种新材料的创制,456万,2018-2020 (2018YFD0100501)

3. 重庆市自然科学基金基础研究与前沿探索项目:基于转录组与全基因组关联分析发掘甘蓝型油菜结角性状相关基因,10万,2018-2021 (cstc2018jcyjA1219)

4. 国家重点研发计划子课题:油菜、蔬菜重要性状的功能基因组与调控网络——油菜高收获指数和高产形成分子机制,60万,2016-2020 (2016YFD0101007)

5. 国家自然科学基金面上项目:甘蓝型油菜生长素极性运输异常导致茎秆弯曲的分子机制,58万,2016-2019 (31571701)

6. 国家自然科学基金青年基金项目:甘蓝型油菜组织特异型启动子的分离与鉴定,23万,2012-2014 (31101175)

7. 教育部博士点新教师基金:甘蓝型油菜BnPAP12基因家族根际有机磷利用的分子机制,3.6万,2011-2013 (20100182120016)

8. 重庆市自然科学基金:甘蓝型油菜BnSKIPa基因家族的耐旱分子机理研究,5万,2012-2014 (cstc2011jjA80026)

9. 重庆市高等学校青年骨干教师资助计划:甘蓝型油菜组织特异型启动子的分离与鉴定,12万,2012-2013

近年代表论文

1. Lu K, Wei L, Li X, Wang Y, Wu J, Liu M, Zhang C, Chen Z, Xiao Z, Jian H, Cheng F, Zhang K, Du H, Cheng C, Qu C, Qian W, Liu L, Wang R, Zou Q, Ying J, Xu X, Mei J, Liang Y, Chai Y-R, Tang Z, Wan H, Ni Y, He Y, Lin N, Fan Y, Sun W, Li N-N, Zhou G, Zheng H, Wang X*, Paterson AH *, Li J* (2019) Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement. Nature Communications. 10: 1154 IF2017= 12.353.

2. Lu K*,†, Li T, He J, Chang W, Zhang R, Liu M, Yu M, Fan Y, Sun W, Ma J, Qu C, Liu L, Li N, Liang Y, Wang R, Tang Z, Qian W, Xu X, Lei B, Zhang K*, Li J* (2018) qPrimerDB: A thermodynamics-based gene-specific qPCR primer database for 147 organisms. Nucleic Acids Research 46: D1229–D1236. IF2017= 11.561.

3. Liu M†, Chang W†, Fan Y, Sun W, Qu C, Zhang K, Liu L, Xu X, Tang Z, Li J, Lu K* (2018) Genome-Wide Identification and Characterization of NODULE-INCEPTION-Like Protein (NLP) Family Genes in Brassica napus. International Journal of Molecular Sciences 19: 2270. IF2017= 3.687.

4. Li H†, Fan Y†, Yu J, Chai L, Zhang J, Jiang J, Cui C, Zheng B, Jiang L*, Lu K*. (2018) Genome-Wide Identification of Flowering-Time Genes in Brassica Species and Reveals a Correlation between Selective Pressure and Expression Patterns of Vernalization-Pathway Genes in Brassica napus. International Journal of Molecular Sciences 19: 3632. IF2017= 3.687.

5. Fan Y†, Yu M†, Liu M, Zhang R, Sun W, Qian M, Duan H, Chang W, Ma J, Qu C, Zhang K*, Lei B*, Lu K*. (2017) Genome-Wide Identification, Evolutionary and Expression Analyses of the GALACTINOL SYNTHASE Gene Family in Rapeseed and Tobacco. International Journal of Molecular Sciences 18:2768. IF2017= 3.687.

6. Zhang K, Wu Z, Tang D, Luo K, Lu H, Liu Y, Dong J, Wang X, Lv C*, Wang J*, Lu K* (2017) Comparative transcriptome analysis reveals critical function of sucrose metabolism related-enzymes in starch accumulation in the storage root of sweet potato. Frontiers in Plant Science 8:914. IF2017= 3.678.

7. Lu K†,*, Peng L, Zhang C, Lu J, Yang B, Xiao Z, Liang Y, Xu X, Qu C, Zhang K, Liu L, Zhu Q, Fu M, Yuan X, Li J* (Corresponding Author) (2017) Genome-wide association and transcriptome analyses reveal candidate genes underlying yield-determining traits in Brassica napus. Frontiers in Plant Science 8: 206. IF2017= 3.678.

8. Lu K, Xiao Z, Jian H, Peng L, Qu C, Fu M, He B, Tie L, Liang Y, Xu X, Li J* (2016) A combination of genome-wide association and transcriptome analysis reveals candidate genes controlling harvest index-related traits in Brassica napus. Scientific Reports 6: 36452. IF2017= 4.122.

9. Qu C†, Zhao H†, Fu F†, Zhang K, Yuan J, Liu L, Wang R, Xu X, Lu K*, Li J-N* (Corresponding Author) (2016) Molecular Mapping and QTL for Expression Profiles of Flavonoid Genes in Brassica napus. Frontiers in Plant Science 7:1691. IF2017= 3.678

10. Qu C, Zhao H, Fu F, Wang Z, Zhang K, Zhou Y, Wang R, Xu X, Tang Z, Lu K*, Li J-N*, (2016) Genome-Wide Survey of Flavonoid Biosynthesis Genes and Gene Expression Analysis between Black and Yellow-Seeded Brassica napus. Frontiers in Plant Science. 7:1755. IF2017= 3.678

11. Jian H, Lu K†, Yang B, Wang T, Zhang L, Zhang A, Wang J, Liu L, Qu C, Li J* (2016) Genome-wide analysis and expression profiling of the SUC and SWEET gene families of sucrose transporters in oilseed rape (Brassica napus L.). Frontiers in Plant Science 7: 1464. IF2017= 3.678

12. Lu K†,*, Guo W, Lu J, Yu H, Qu C, Tang Z, Li J, Chai Y, Liang Y* (2015) Genome-wide survey and expression profile analysis of the mitogen-activated protein kinase (MAPK) gene family in Brassica rapa. PLoS ONE 10: e0132051.

13. Qu, C, Fu F, Liu M, Zhao H., Liu C, Li J, Tang Z, Xu X, Qiu X, Wang R.*, Lu K*. (*Corresponding Author) (2015) Comparative transcriptome analysis of recessive male sterility (RGMS) in sterile and fertile Brassica napus Lines. PLoS ONE, 10: e0144118. IF2017= 2.766

14. Lei B, Lu K†,*, Ding F, Zhang K, Chen Y, Zhao H, Zhang L, Ren Z, Qu C, Guo W, Wang J, Pan W* (*Corresponding Author) (2014) RNA sequencing analysis reveals transcriptomic variations in tobacco (Nicotiana tabacum) leaves affected by climate, soil, and tillage factors. International Journal of Molecular Sciences 15(4): 6137-6160. IF2017= 3.687.

15. Lei B, Zhao XH, Zhang K, Zhang J, Ren W, Ren R, Ren Z, Chen Y, Zhao HN, Pan WJ, Chen W, Li HX, Ding FZ*, Lu K*. (Corresponding Author) (2013) Comparative transcriptome analysis of tobacco (Nicotiana tabacum) leaves to identify aroma compound-related genes expressed in different cultivated regions. Molecular Biology Reports 40: 345-357. IF2017= 1.889

16. Qu C, Fu F, Lu K, Zhang K, Wang R, Xu X, Wang M, Lu J, Wan H, Tang Z, Li J*. (2013) Differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded Brassica napus. Journal of Experimental Botany 64(10): 2885-2898. IF2017=5.354

17. Lu K, Chai YR, Zhang K, Wang R, Chen L, Lei B, Lu J, Xu XF, Li JN* (2008). Cloning and characterization of phosphorus starvation inducible Brassica napus PURPLE ACID PHOSPHATASE 12 gene family, and imprinting of a recently evolved MITE-minisatellite twin structure. Theoretical and Applied Genetics 117: 963–975. IF2017= 3.930

参编专著

Lu K., Snowdon R., Li J. (2018) Case Study for Trait-Related Gene Evolution: Glucosinolates. In: Liu S., Snowdon R., Chalhoub B. (eds) The Brassica napus Genome. Compendium of Plant Genomes. Springer, Cham.

国际学术会议报告

1. Lu K. Differential accumulation of phenolic compounds and expression of related genes between the black- and yellow-seeded Brassica napus, Initialization Meeting of Crop Germplasm Resources Utilization and Innovation Base (CGRUIB) Programme, July 17-19, 2012, Chongqing, P. R. China

2. Lu K. Expression quantitative trait loci analysis of BAN, F3H and TT19 genes in Brassica napus, 13th International Rapeseed Congress, June 5–9, 2011, Prague, Czech Republic

3. Lu K. Expression quantitative trait loci analysis of BAN, F3H and TT19 genes in Brassica napus, 17th Crucifer Genetics Workshop, Sept 5-8, 2010, Saskatoon, Canada

4. Lu K. Cloning and comparative analysis of phosphate-starvation Brassica PAP12 and PAP17 gene families, Korea-China Joint Workshop on Brassica Genomics, Dec 8, 2009, Suwon, Republic of Korea

5. Lu K. Genome-wide association analysis of Sclerotinia sclerotiorum and lodging resistance in Brassica napus, 14th International Rapeseed Congress, July 5-9, 2015, Saskatoon, Canada

6. Lu K. Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its domestication and improvement, International Workshop on Brassica Genomics, March 27-28, 2018, Wuhan, China

7. Lu K. Whole genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement, Canadian Lipid and Bioresource Conference 2018, Sept 9-11, 2018, Saskatoon, Canada

8. Lu K. Whole genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement, 15th International Rapeseed Congress, June 16-19, 2018, Berlin, Germany

国内学术会议报告

1. Lu K. Whole genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement, 第六届全国计算生物学与生物信息学术会议, 2019330-31, 成都

其他学术经历

1. 2009年国际微管植物生物学大会会议(PVBA2009)和2014年现代农业中功能基因组和遗传学应用国际学术会议(AFGGMA2014)和2016年现代生物技术与作物种质创新学术研讨会(ISMBCG2016)大会秘书

2. 2012-2016 中国博士后科学基金通讯评审专家

3. 2015-至今 国家自然科学基金通讯评审专家

4. 2019-至今 中国农学通报编委

5. 2013-至今 专业学术期刊THE PLANT CELLPlant Biotechnology JournalHorticulture ResearchScientific DataJournal of Agricultural and Food ChemistryPLoS Computational BiologyPlant Molecular BiologyJournal of Integrative Plant BiologyBMC GenomicsBMC Plant BiologyGeneFrontiers in Plant ScienceFrontiers in GeneticsMolecular Genetics and GenomicsMolecular BreedingPLoS ONEPlant BiologyPlant Physiology and BiochemistryTropical Plant BiologyFEBS Open Bio、作物学报、中国农业科学、农业生物技术学报、基因组学与应用生物学、华中农业大学学报、中国油料作物学报、广东农业科学审稿专家。

 

 

CIRRICULUM VITA

Kun Lu, Ph.D., Professor & Ph.D Advisor

College of Agronomy and Biotechnology,

Academy of Agricultural Sciences,

Southwest University, Chongqing, China

Researchgate: https://www.researchgate.net/profile/Kun_Lu3

ORCiD: https://orcid.org/0000-0003-1370-8633

 

Dr. Kun Lu is working as Professor at College of Agronomy and Biotechnology, Southwest University (SWU), China. His area of interest includes Rapeseed Population Genomics and Functional Genomics. He regularly lectures, supervises PhD candidates, publishes in international journals and serve as secretary for organizing international conferences for crop improvement, and has been the recipient of several scholarships and grants, including the National Natural Science Foundation of China, the National Key Research and Development Plan of China, and the Natural Science Foundation of Chongqing, China. He has served as an expert reviewer for the Natural Science Foundation of China and China Postdoctoral Science Foundation, and for several international journals, such as Plant Cell and Plant Biotechnology Journal. He has published more than 30 research articles in peer-review journals as the first or corresponding author, including Nature Communications and Nucleic Acids Research, and won the “Outstanding Young Teacher in Chongqing Award” and “Young Innovator Awards of Oil Crop Branch of Corp Science Society”.

Education

     09/2004 – 06/2008   Ph.D., Southwest University, Chongqing, P. R. China

Nutritional Molecular Biology of Crops

     09/200206/2004   M.Sc., Southwest Agricultural University, Chongqing, P. R. China

Ecology: Agricultural Ecology & Sustainable Ecosystems

     09/199806/2002   B.Sc., Southwest Agricultural University, Chongqing, P. R. China

Agronomy: Physiology and Biochemistry of Crops

Postdoctoral Experience

     08/2008 04/2010   Postdoctoral Fellow, Southwest University, Chongqing, P. R. China

Plant Functional Genomics

09/2012 09/2013 Postdoctoral Research Associate, Purdue University, West Lafayette, USA, Plant Epigenetics

Professional Experience

     05/2010 06/2017             Associate Professor, Southwest University, Chongqing, P. R. China

     06/2017 present              Professor, Southwest University, Chongqing, P. R. China

     12/2018 present              Director, Engineering Research Center of South Upland Agriculture,

Ministry of Education, China

2/2019 present            Deputy Director, State Cultivation Base of Crop Stress Biology for

Southern Mountainous Land of Southwest University, China

6/2019 present              Vice Dean, Academy of Agricultural Sciences, Southwest University, China

Related experience and practice

1.       Supervising postgraduate and Ph.D. candidate

2.       Secretary of International Conference on Plant Vascular Biology and Agriculture 2009 (PVBA2009), which hold on Jun 21-24, 2009

3.       Secretary of Initialization Meeting of Crop Germplasm Resources Utilization and Innovation Base (CGRUIB) Programme, which hold on July 17-19, 2012

4.       Secretary of International Symposium on Application of Functional Genomics and Genetics to Modern Agriculture 2014 (AFGGMA 2014), which hold on June 13-14, 2014

Grants (as PI)

1. National Natural Science Foundation of China (NSFC, 31871653)

2. National Key Research and Development Plan (2018YFD0100501)

3. Natural Science Foundation of Chongqing, China (cstc2018jcyjA1219)

4. National Key Research and Development Plan (2016YFD0101007)

5. National Natural Science Foundation of China (NSFC, 31571701)

6. National Natural Science Foundation of China (NSFC, 30371516)

7. Foundation of Guizhou Tobacco Research Institute, Guiyang, China

8. Foundation for University Key Teacher in Chongqing

9. Natural Science Foundation of Chongqing, China (cstc2011jjA80026)

10. Specialized Research Fund for the Doctoral Program of Higher Education of China (20100182120016)

11. China Postdoctoral Science Foundation (20090460717)

12. Fundamental Research Funds for the Central Universities (XDJK2009C183)

13. Southwest University Research Foundation (SWU110015)

14. Fundamental Research Funds for the Central Universities (XDJK2012A009)

Academic service

1. Reviewer of China Postdoctoral Science Foundation

2. Reviewer of Natural Science Foundation of China

3. Reviewer of THE PLANT CELL, Plant Biotechnology Journal, Horticulture Research, Scientific Data, Journal of Agricultural and Food Chemistry, PLoS Computational Biology, Plant Molecular Biology, Journal of Integrative Plant Biology, BMC Genomics, BMC Plant Biology, Gene, Frontiers in Plant Science, Frontiers in Genetics, Molecular Genetics and Genomics, Molecular Breeding, PLoS ONE, Plant Biology, Plant Physiology and Biochemistry, Tropical Plant Biology, FEBS Open Bio.

Representative Publication List

Please see abovementioned papers.