卢坤
发布时间2013-12-30 11:05:08     作者:    浏览次数: 次

        卢坤,中共党员,博士,教授,博士生导师,重庆英才·创新领军人才、重庆市高等学校青年骨干教师,现任西南大学农学与生物科技学院副院长、农业科学研究院副院长、南方山地农业教育部工程研究中心主任,南方山地作物逆境生物学国家级培育基地副主任,油菜分子育种研究所负责人。目前,主持国家自然科学基金3项、国家重点研发计划课题1项,省部级项目8项,在Nature CommunicationsNucleic Acids ResearchPNAS等杂志发表论文100余篇,参编英文专著1部,获国家发明专利授权8项,国际会议口头报告8次;任PeerJPLoS ONEOil Crop Science、《中国油料作物学报》和《中国农学通报》编委,Plant Cell等杂志审稿专家;被聘为全球油菜创新理事会(GCIRC)理事、重庆市科技青年联合会第六届理事会常务理事、重庆市生物化学与分子生物学副监事长、重庆市农学会理事及国家自然科学基金、教育部学位中心、北京市和河北省科技计划项目评审专家;获中国作物学会油料专委会首届青年创新奖”和重庆市科协自然科学优秀学术论文奖。

英文简介

Researchgatehttps://www.researchgate.net/profile/Kun_Lu3

ORCiD: https://orcid.org/0000-0003-1370-8633

Publons: https://publons.com/researcher/1230871/kun-lu/

Google Scholar: https://scholar.google.com/citations?hl=en&user=R964Ky4AAAAJ

学习经历

1998.09-2002.06:西南农业大学农学与生物科技学院,农学学士

2002.09-2004.06:西南农业大学农学与生物科技学院,生态学硕士(导师:郑钦玉)

2004.09-2008.06:西南大学农学与生物科技学院,农学博士(导师:李加纳)

工作经历

2008.07-2010.05:西南大学农学与生物科技学院,生物学博士后(合作导师:李加纳)

2012.09-2013.09Department of Horticulture and Landscape Architecture, Purdue University, Postdoctoral fellow (合作导师:Zhu Jian-Kang美国科学院院士)

2010.05-2017.06:西南大学农学与生物科技学院,副研究员,硕士生导师

2017.07-至今:西南大学农学与生物科技学院,教授,博士生导师

2018.06-至今:南方山地农业教育部工程技术研究中心主任

2019.02-至今:南方山地作物逆境生物学国家级培育基地副主任

2019.06-至今:西南大学农业科学研究院副院长

2020.06-至今:西南大学农学与生物科技学院副院长

研究方向

1. 油菜高收获指数与高产的分子机制

2. 油菜群体基因组及其适应性进化机制

3. 作物智慧育种与基因组大数据平台开发

研究生、博士后招生

1. 博士后:作物学、生物学

2. 博士研究生:作物遗传育种

3. 硕士研究生:作物遗传育种、遗传学、生物信息学

联系方式

E-maildrlukun at swu.edu.cn

通信地址:重庆市北碚区天生路216号西南大学农业科学研究院;邮编:400716

近年主持的主要科研项目

1. 国家自然科学基金面上项目:甘蓝型油菜SPL基因介导ROSSA途径提高菌核病抗性的分子机制,60万,2019-2022 (31871653)

2. 国家重点研发计划课题:长江上游及北方油菜高产优质适宜机械化新品种培育——油菜优异育种新材料的创制,456万,2018-2020 (2018YFD0100501)

3. 重庆市自然科学基金基础研究与前沿探索项目:基于转录组与全基因组关联分析发掘甘蓝型油菜结角性状相关基因,10万,2018-2021 (cstc2018jcyjA1219)

4. 国家重点研发计划子课题:油菜、蔬菜重要性状的功能基因组与调控网络——油菜高收获指数和高产形成分子机制,60万,2016-2020 (2016YFD0101007)

5. 国家自然科学基金面上项目:甘蓝型油菜生长素极性运输异常导致茎秆弯曲的分子机制,58万,2016-2019 (31571701)

6. 国家自然科学基金青年基金项目:甘蓝型油菜组织特异型启动子的分离与鉴定,23万,2012-2014 (31101175)

代表性论文(*:通讯作者)

1. Niu, Yue, Wu, Limin, Li, Yanhua, Huang, Hualei, Qian, Mingchao, Sun, Wei, Zhu, Hong, Xu, Yuanfang, Fan, Yonghai, Mahmood, Umer, Xu, Benbo, Zhang, Kai, Qu, Cunmin, Li, Jiana, Lu, Kun* (2020) Deciphering the transcriptional regulatory networks that control size, color, and oil content in Brassica rapa seeds. Biotechnology for Biofuels. 2020 13: 87. IF2018= 5.452.

2. Chao, Haoyu#, Li, Tian#, Luo, Chaoyu#, Huang, Hualei, Ruan, Yingfei, Li, Xiaodong, Niu, Yue, Fan, Yonghai, Sun, Wei, Zhang, Kai, Li, Jiana, Qu, Cunmin, Lu, Kun* (2020) BrassicaEDB: A gene expression database for Brassica crops. International Journal of Molecular Sciences 21: 5831. IF2019= 4.556.

3. Qu, Cunmin#, Yin, Nengwen#, Chen, Si#, Wang, Shuxian, Chen, Xingyu, Zhao, Huiyan, Shen, Shulin, Fu, Fuyou, Zhou, Baojin, Xu, Xinfu, Liu, Liezhao, Lu, Kun*, Li, Jiana* (2020) Comparative analysis of the metabolic profiles of yellow- vs. black-seeded rapeseed using UPLCHESI-MS/MS and transcriptome analysis. Journal of Agricultural and Food Chemistry. 68: 3033–3049. IF2018= 3.571.

4. Chang, Wei#, Zhao, Huina #, Yu, Shizhou, Yu, Jing, Cai, Kai, Sun, Wei, Liu, Xumei, Li, Xiaodong, Yu, Mengna, Ali, Shahzad, Zhang, Kai, Qu, Cunmin, Lei, Bo*, Lu, Kun* (2020) Comparative transcriptome and metabolomic profiling reveal the complex mechanisms underlying the developmental dynamics of tobacco leaves. Genomics. 112(6): 4009–4022. IF2019= 6.205.

5. Shen, Shulin#, Sun, Fujun#, Zhu, Meichen#, Chen, Si, Guan, Mingwei, Chen, Rui, Tang, Fang, Yin, Nengwen, Xu, Xinfu, Tang, Zhanglin, Li, Jiana, Lu, Kun*, Qu, Cunmin* (2020). Genome-wide identification AINTEGUMENTA-like (AIL) genes in Brassica species and expression patterns during reproductive development in Brassica napus L. PLoS ONE, 15(6): e0234411. IF2019= 2.806.

6. Wan, Yuanyuan#, Wang, Zhen#, Xia, Jichun, Shen, Shulin, Guan, Mingwei, Zhu, Meichen, Qiao, Cailin, Sun, Fujun, Liang, Ying, Li, Jiana, Lu, Kun*, Qu, Cunmin* (2020) Genome-wide analysis of phosphorus transporter genes in Brassica and their roles in heavy metal stress tolerance. International Journal of Molecular Sciences 21(6): 2209. IF2019= 4.556.

7. Lu, Kun#, Wei, Lijuan#, Li, Xiaolong#, Wang, Yuntong, Wu, Jian, Liu, Miao, Zhang, Chao, Chen, Zhiyou, Xiao, Zhongchun, Jian, Hongju, Cheng, Feng, Zhang, Kai, Du, Hai, Cheng, Xinchao, Qu, Cunming, Qian, Wei, Liu, Liezhao, Wang, Rui, Zou, Qingyuan, Ying, Jiamin, Xu, Xingfu, Mei, Jiaqing, Liang, Ying, Chai, You-Rong, Tang, Zhanglin, Wan, Huafang, Ni, Yu, He, Yajun, Lin, Na, Fan, Yonghai, Sun, Wei, Li, Nan-Nan, Zhou, Gang, Zheng, Hongkun, Wang, Xiaowu*, Paterson, Andrew H.*, Li, Jiana* (2019) Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement. Nature Communications. 10: 1154. IF2019= 12.124.

8. Chen, Zhiyou#, Huo, Qiang#, Yang, Hong#, Jian, Hongju, Qu, Cunmin, Lu, Kun*, Li, Jiana* (2019) Joint RNA-Seq and miRNA profiling analyses to reveal molecular mechanisms in regulating thickness of pod canopy in Brassica napus. Genes. 10(8): E591. IF2018= 3.331.

9. Lu, Kun*,#, Li, Tian#, He, Jian#, Chang, Wei#, Zhang, Rui, Liu, Miao, Yu, Mengna, Fan, Yonghai, Ma, Jinqi, Sun, Wei, Qu, Cunmin, Liu, Liezhao, Li, Nannan, Liang, Ying, Wang, Rui, Qian, Wei, Tang, Zhanglin, Xu, Xinfu, Lei, Bo, Zhang, Kai*, Li, Jiana* (2018) qPrimerDB: A thermodynamics-based gene-specific qPCR primer database for 147 organisms. Nucleic Acids Research 46: D1229–D1236. IF2017= 11.147.

10. Liu, Miao#, Chang, Wei#, Fan, Yonghai, Sun, Wei, Qu, Cunmin, Zhang, Kai, Liu, Liezhao, Xu, Xingfu, Tang, Zhanglin, Li, Jiana, Lu, Kun* (2018) Genome-Wide Identification and Characterization of NODULE-INCEPTION-Like Protein (NLP) Family Genes in Brassica napus. International Journal of Molecular Sciences 19: 2270. IF2018= 4.183.

11. Li, Haojie#, Fan, Yonghai#, Yu, Jingyin, Chai, Liang, Zhang, Jingfang, Jiang, Jun, Cui, Cheng, Zheng, Benchuan, Jiang, Liangcai*, Lu, Kun* (2018) Genome-Wide Identification of Flowering-Time Genes in Brassica Species and Reveals a Correlation between Selective Pressure and Expression Patterns of Vernalization-Pathway Genes in Brassica napus. International Journal of Molecular Sciences 19: 3632. IF2018= 4.183.

12. Fan, Yonghai#, Yu, Mengna#, Liu, Miao, Zhang, Rui, Sun, Wei, Qian, Mingchao, Duan, Huichun, Chang, Wei, Ma, Jinqi, Qu, Cunmin, Zhang, Kai*, Lei, Bo*, Lu, Kun*. (2017) Genome-Wide Identification, Evolutionary and Expression Analyses of the GALACTINOL SYNTHASE Gene Family in Rapeseed and Tobacco. International Journal of Molecular Sciences 18: 2768. IF2018= 4.183.

13. Zhang, Kai, Wu, Zhengdan, Tang, Daobin, Luo, Kai, Lu, Huixiang, Liu, Yingying, Dong, Jie, Wang, Xin, Lv, Changwen*, Wang, Jichun*, Lu, Kun* (2017) Comparative transcriptome analysis reveals critical function of sucrose metabolism related-enzymes in starch accumulation in the storage root of sweet potato. Frontiers in Plant Science 8:914. IF2018= 4.106.

14. Lu, Kun#,*, Peng, Liu#, Zhang, Chao, Lu, Junhua, Yang, Bo, Xiao, Zhongchun, Liang, Ying, Xu, Xingfu, Qu, Cunmin, Zhang, Kai, Liu, Liezhao, Zhu, Qinlong, Fu, Minglian, Yuan, Xiaoyan, Li, Jiana* (2017) Genome-wide association and transcriptome analyses reveal candidate genes underlying yield-determining traits in Brassica napus. Frontiers in Plant Science 8: 206. IF2018= 4.106.

15. Lu, Kun#, Xiao, Zhongchun#, Jian, Hongju#, Peng, Liu, Qu, Cunmin, Fu, Minglian, He, Bin, Tie, Linmei, Liang, Ying, Xu, Xingfu, Li, Jiana* (2016) A combination of genome-wide association and transcriptome analysis reveals candidate genes controlling harvest index-related traits in Brassica napus. Scientific Reports 6: 36452. IF2018= 4.011.

16. Qu, Cunmin#, Zhao, Huiyan#, Fu, Fuyou#, Zhang, Kai, Yuan, Jianglian, Liu, Liezhao, Wang, Rui, Xu, Xinfu, Lu, Kun*, Li, Jia-Na* (2016) Molecular mapping and QTL for expression profiles of flavonoid genes in Brassica napus. Frontiers in Plant Science 7:1691. IF2018= 4.106.

17. Qu, Cunmin, Zhao, Huiyan, Fu, Fuyou, Wang, Zhen, Zhang, Kai, Zhou, Yan, Wang, Xin, Wang, Rui, Xu, Xinfu, Tang, Zhanglin, Lu, Kun*, Li, Jia-Na* (2016) Genome-wide survey of flavonoid biosynthesis genes and gene expression analysis between black and yellow-seeded Brassica napus. Frontiers in Plant Science. 7:1755. IF2018= 4.106.

18. Lu, Kun†,#, Guo, Wenjin#, Lu, Junxing#, Yu, Hao, Qu, Cunmin, Tang, Zhanglin, Li, Jiana, Chai, Yourong, Liang, Ying* (2015) Genome-wide survey and expression profile analysis of the mitogen-activated protein kinase (MAPK) gene family in Brassica rapa. PLoS ONE 10: e0132051. IF2018= 2.776.

19. Qu, Cunmin#, Fu, Fuyou#, Liu, Miao#, Zhao, Huiyan, Liu, Chuan, Li, Jiana, Tang, Zhanglin, Xu, Xinfu, Qiu, Xiao, Wang, Rui*, Lu, Kun* (2015) Comparative transcriptome analysis of recessive male sterility (RGMS) in sterile and fertile Brassica napus Lines. PLoS ONE, 10: e0144118. IF2018= 2.776.

20. Lei, Bo#, Lu, Kun#,*, Ding, Fuzhang, Zhang, Kai, Chen, Yi, Zhao, Huina, Zhang, Lin, Ren, Zhu, Qu, Cunmin, Guo, Wenjing, Wang, Jing, Pan, Wenjie (2014) RNA sequencing analysis reveals transcriptomic variations in tobacco (Nicotiana tabacum) leaves affected by climate, soil, and tillage factors. International Journal of Molecular Sciences 15(4): 61376160. IF2018= 4.183.

21. Lei, Bo, Zhao, Xue-Hua, Zhang, Kai, Zhang, Jie, Ren, Wei, Ren, Zhu, Chen, Yi, Zhao, Hui-Na, Pan, Wen-Jie, Chen, Wei, Li, Hong-Xun, Deng, Wen-Ya, Ding, Fu-Zhang*, Lu, Kun* (2013) Comparative transcriptome analysis of tobacco (Nicotiana tabacum) leaves to identify aroma compound-related genes expressed in different cultivated regions. Molecular Biology Reports 40: 345357. IF2018= 2.107.

22. Qu, Cunmin#, Fu, Fuyou#, Lu, Kun#, Zhang, Kai, Wang, Rui, Xu, Xinfu, Wang, Min, Lu, Junxing, Wan, Huafang, Tang Zhanglin, Li, Jiana. (2013) Differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded Brassica napus. Journal of Experimental Botany 64(10): 28852898. IF2017=5.360.

23. Lu, Kun, Chai, You-Rong*, Zhang, Kai, Wang, Rui, Chen, Li, Lei, Bo, Lu, Jun, Xu, Xin-Fu, Li, Jia-Na (2008). Cloning and characterization of phosphorus starvation inducible Brassica napus PURPLE ACID PHOSPHATASE 12 gene family, and imprinting of a recently evolved MITE-minisatellite twin structure. Theoretical and Applied Genetics 117: 963–975. IF2017= 3.926.

参编专著

1. Kun Lu, Rod Snowdon, Jiana Li*. Case Study for Trait-Related Gene Evolution: Glucosinolates. In: Liu S., Snowdon R., Chalhoub B. (eds) The Brassica napus Genome. Compendium of Plant Genomes. Springer, Cham. 2018 Oct 23; pp 199-222. doi: 10.1007/978-3-319-43694-4_12.

国际学术会议报告

1. Lu, Kun. Differential accumulation of phenolic compounds and expression of related genes between the black- and yellow-seeded Brassica napus, Initialization Meeting of Crop Germplasm Resources Utilization and Innovation Base (CGRUIB) Programme, July 17-19, 2012, Chongqing, China

2. Lu, Kun. Expression quantitative trait loci analysis of BAN, F3H and TT19 genes in Brassica napus, 13th International Rapeseed Congress, June 5–9, 2011, Prague, Czech Republic

3. Lu, Kun. Expression quantitative trait loci analysis of BAN, F3H and TT19 genes in Brassica napus, 17th Crucifer Genetics Workshop, Sept 5-8, 2010, Saskatoon, Canada

4. Lu, Kun. Cloning and comparative analysis of phosphate-starvation Brassica PAP12 and PAP17 gene families, Korea-China Joint Workshop on Brassica Genomics, Dec 8, 2009, Suwon, Republic of Korea

5. Lu, Kun. Genome-wide association analysis of Sclerotinia sclerotiorum and lodging resistance in Brassica napus, 14th International Rapeseed Congress, July 5-9, 2015, Saskatoon, Canada

6. Kun Lu. Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its domestication and improvement, International Workshop on Brassica Genomics, March 27-28, 2018, Wuhan, China

7. Lu, Kun. Whole genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement, Canadian Lipid and Bioresource Conference 2018, Sept 9-11, 2018, Saskatoon, Canada

8. Lu, Kun. Whole genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement, 15th International Rapeseed Congress, June 16-19, 2019, Berlin, Germany